# filelist

dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins_3rdparty/ball/src/source/MATHS
filetypes: fffffffffffff
filenames:
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filenames: GTTestsMsaExcludeList.cpp/GTTestsMsaExcludeList.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/msa_editor/exclude_list


filenames: GTTestsAnnotationsImport.cpp/GTTestsAnnotationsImport.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/annotations_import


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/repeat_finder/_tmp/moc/release
filetypes: ffffffffffffff
filenames:
  moc_FindRepeatsDialog.cpp/moc_FindRepeatsTask.cpp/moc_FindTandemsDialog.cpp/moc_RFBase.cpp/moc_RFDiagonal.cpp/moc_RFSArray.cpp/moc_RFSArrayWK.cpp/moc_RFTaskFactory.cpp/moc_RF_SArray_TandemFinder.cpp/moc_RepeatFinderPlugin.cpp/moc_RepeatFinderTests.cpp/moc_RepeatQuery.cpp/moc_RepeatWorker.cpp/moc_TandemQuery.cpp


filenames: GTTestsToggleView.cpp/GTTestsToggleView.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/toggle_view


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Formats/src/sqlite_dbi
filetypes: ffffffffffffffffffffffffffdd
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/api_tests/src/core/datatype/msa
filetypes: ffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/tcoffee
filetypes: ffffffff
filenames:
  TCoffeeSupport.cpp/TCoffeeSupport.h/TCoffeeSupportRunDialog.cpp/TCoffeeSupportRunDialog.h/TCoffeeSupportTask.cpp/TCoffeeSupportTask.h/TCoffeeWorker.cpp/TCoffeeWorker.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/bowtie2
filetypes: ffffffffd
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Lang/src/model/wizard
filetypes: fffffffffffffffffff
filenames:
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filenames: Primer3DialogFiller.cpp/Primer3DialogFiller.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/runnables/ugene/plugins_3rdparty/primer3


filenames: GTTestsProjectFiltering.cpp/GTTestsProjectFiltering.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/project/project_filtering


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/tophat
filetypes: ffffffff
filenames:
  TopHatSettings.cpp/TopHatSettings.h/TopHatSupport.cpp/TopHatSupport.h/TopHatSupportTask.cpp/TopHatSupportTask.h/TopHatWorker.cpp/TopHatWorker.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/pcr/_tmp/ui
filetypes: ffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/pcr/src
filetypes: ffffffffffffffffffffffffffffffffffffffffffffdd
filenames:
  EditPrimerDialog.cpp/EditPrimerDialog.h/ExtractProductTask.cpp/ExtractProductTask.h/FindPrimerPairsWorker.cpp/FindPrimerPairsWorker.h/InSilicoPcrOPWidgetFactory.cpp/InSilicoPcrOPWidgetFactory.h/InSilicoPcrOptionPanelWidget.cpp/InSilicoPcrOptionPanelWidget.h/InSilicoPcrProductsTable.cpp/InSilicoPcrProductsTable.h/InSilicoPcrTask.cpp/InSilicoPcrTask.h/InSilicoPcrWorker.cpp/InSilicoPcrWorker.h/InSilicoPcrWorkflowTask.cpp/InSilicoPcrWorkflowTask.h/PcrOptionsPanelSavableTab.cpp/PcrOptionsPanelSavableTab.h/PcrPlugin.cpp/PcrPlugin.h/PrimerGroupBox.cpp/PrimerGroupBox.h/PrimerLibrary.cpp/PrimerLibrary.h/PrimerLibraryMdiWindow.cpp/PrimerLibraryMdiWindow.h/PrimerLibrarySelector.cpp/PrimerLibrarySelector.h/PrimerLibraryTable.cpp/PrimerLibraryTable.h/PrimerLibraryTableController.cpp/PrimerLibraryTableController.h/PrimerLibraryWidget.cpp/PrimerLibraryWidget.h/PrimersDetailsDialog.cpp/PrimersDetailsDialog.h/PrimersGrouperWorker.cpp/PrimersGrouperWorker.h/TempCalcDelegate.cpp/TempCalcDelegate.h/TempCalcPropertyWidget.cpp/TempCalcPropertyWidget.h/export/import


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2View/src/ov_mca
filetypes: ffffffffffffffffffffffffffffddd
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Algorithm/src/util_msa_consensus
filetypes: ffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/ugeneui/src/welcome_page
filetypes: ffffff
filenames:
  WelcomePageMdi.cpp/WelcomePageMdi.h/WelcomePageMdiController.cpp/WelcomePageMdiController.h/WelcomePageWidget.cpp/WelcomePageWidget.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/weight_matrix/src
filetypes: fffffffffffffffffffffffffff
filenames:
  PMatrixFormat.cpp/PMatrixFormat.h/PWMBuildDialogController.cpp/PWMBuildDialogController.h/PWMJASPARDialogController.cpp/PWMJASPARDialogController.h/PWMSearchDialogController.cpp/PWMSearchDialogController.h/SetParametersDialogController.cpp/SetParametersDialogController.h/ViewMatrixDialogController.cpp/ViewMatrixDialogController.h/WMQuery.cpp/WMQuery.h/WeightMatrixAlgorithm.cpp/WeightMatrixAlgorithm.h/WeightMatrixBuildWorker.cpp/WeightMatrixIO.cpp/WeightMatrixIO.h/WeightMatrixIOWorkers.cpp/WeightMatrixIOWorkers.h/WeightMatrixPlugin.cpp/WeightMatrixPlugin.h/WeightMatrixSearchTask.cpp/WeightMatrixSearchTask.h/WeightMatrixSearchWorker.cpp/WeightMatrixWorkers.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/pcr/src/export
filetypes: ffffff
filenames:
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filetypes: ffddddddd
dirname:
  /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests/common_scenarios/workflow_designer

filenames:
  GTTestsWorkflowDesigner.cpp/GTTestsWorkflowDesigner.h/dashboard/elements/estimating/name_filter/parameters_validation/samples/scripting


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/GUITestBase/src/tests
filetypes: ffffffddd
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/samtools
filetypes: ffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins_3rdparty/phylip/src
filetypes: ffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins_3rdparty/hmm2/src/u_search
filetypes: ffffffffffffff
filenames:
  HMMSearchDialogController.cpp/HMMSearchDialogController.h/HMMSearchQDActor.cpp/HMMSearchQDActor.h/HMMSearchTask.cpp/HMMSearchTask.h/HMMSearchWorker.cpp/HMMSearchWorker.h/uhmmsearch.cpp/uhmmsearch.h/uhmmsearch_opt.cpp/uhmmsearch_opt.h/uhmmsearch_sse.cpp/uhmmsearch_sse.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/stringtie
filetypes: ffffffffffffff
filenames:
  StringTieSupport.cpp/StringTieSupport.h/StringTieTask.cpp/StringTieTask.h/StringTieWorker.cpp/StringTieWorker.h/StringtieGeneAbundanceReportPrompter.cpp/StringtieGeneAbundanceReportPrompter.h/StringtieGeneAbundanceReportTask.cpp/StringtieGeneAbundanceReportTask.h/StringtieGeneAbundanceReportWorker.cpp/StringtieGeneAbundanceReportWorker.h/StringtieGeneAbundanceReportWorkerFactory.cpp/StringtieGeneAbundanceReportWorkerFactory.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2View/src/ov_msa/highlighting
filetypes: fffffffff
filenames:
  MSAHighlightingTab.cpp/MSAHighlightingTab.h/MSAHighlightingTabFactory.cpp/MSAHighlightingTabFactory.h/MsaHighlightingSavableTab.cpp/MsaHighlightingSavableTab.h/MsaSchemeComboBoxController.h/MsaSchemesMenuBuilder.cpp/MsaSchemesMenuBuilder.h


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Private/src/crash_handler
filetypes: fffffffffff
filenames:
  CrashHandler.cpp/CrashHandler.h/CrashHandlerArgsHelper.cpp/CrashHandlerArgsHelper.h/CrashHandlerPrivate.cpp/CrashHandlerPrivate.h/CrashHandlerPrivateUnixNotMac.cpp/CrashHandlerPrivateUnixNotMac.h/CrashLogCache.cpp/CrashLogCache.h/StackWalker.cpp


dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Lang/src/tasks
filetypes: ffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/dna_export/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Core/src/models
filetypes: ffffffffffffffffffffff
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2View/src/temperature
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filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Private/src
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filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Formats/src/util
filetypes: fffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Core/src/dbi
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filenames:
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filenames: GTTestsMSAEditorReplaceCharacter.cpp/GTTestsMSAEditorReplaceCharacter.h
filetypes: ff
dirname:
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filenames: FindAnnotationCollocationsDialogFiller.cpp/FindAnnotationCollocationsDialogFiller.h
filetypes: ff
dirname:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Lang/src/library
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filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Algorithm/src/structural_alignment
filetypes: ffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/dbi_bam/_tmp/moc/release
filetypes: fffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/ugeneui/src/app_settings
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filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/workflow_designer/src
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffddddd
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/dbi_bam/src
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/corelibs/U2Formats/_tmp/moc/release
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-46.0-1.fc38.x86_64/src/plugins/external_tool_support/src/hmmer
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